Mouse Gene Set: KAMIKUBO_MYELOID_CEBPA_NETWORK

For the Human gene set with the same name, see KAMIKUBO_MYELOID_CEBPA_NETWORK

Standard name KAMIKUBO_MYELOID_CEBPA_NETWORK
Systematic name MM883
Brief description Network of differentially expressed myeloid genes centered around CEBPA [GeneID=1050].
Full description or abstract Dominant RUNX1 inhibition has been proposed as a common pathway for CBF leukemia. CBF beta-SMMHC, a fusion protein in human acute myeloid leukemia (AML), dominantly inhibits RUNX1 largely through its RUNX1 high-affinity binding domain (HABD). However, the type I CBF beta-SMMHC fusion in AML patients lacks HABD. Here, we report that the type I CBF beta-SMMHC protein binds RUNX1 inefficiently. Knockin mice expressing CBF beta-SMMHC with a HABD deletion developed leukemia quickly, even though hematopoietic defects associated with Runx1-inhibition were partially rescued. A larger pool of leukemia-initiating cells, increased MN1 expression, and retention of RUNX1 phosphorylation are potential mechanisms for accelerated leukemia development in these mice. Our data suggest that RUNX1 dominant inhibition may not be a critical step for leukemogenesis by CBF beta-SMMHC.
Collection M2: Curated
      CGP: Chemical and Genetic Perturbations
Source publication Pubmed 20478528   Authors: Kamikubo Y,Zhao L,Wunderlich M,Corpora T,Hyde RK,Paul TA,Kundu M,Garrett L,Compton S,Huang G,Wolff L,Ito Y,Bushweller J,Mulloy JC,Liu PP
Exact source Table 1S
Related gene sets (show 1 additional gene sets from the source publication)

(show 7 gene sets from the same authors)
External links
Filtered by similarity ?
Source species Mus musculus
Contributed by Arthur Liberzon (MSigDB Team)
Source platform or
identifier namespace
AFFY_Mouse430
Dataset references (show 1 datasets)
Download gene set format: grp | gmt | xml | json | TSV metadata
Compute overlaps ? (show collections to investigate for overlap with this gene set)
Compendia expression profiles ? NG-CHM interactive heatmaps
(Please note that clustering takes a few seconds)
Mouse Transcriptomic BodyMap compendium

Legacy heatmaps (PNG)
Mouse Transcriptomic BodyMap compendium
Advanced query Further investigate these 30 genes
Show members (show 30 source identifiers mapped to 30 genes)
Version history 2022.1.Mm: First Introduced.

See MSigDB license terms here. Please note that certain gene sets have special access terms.