login
register
GSEA Home
Downloads
Molecular Signatures Database
Documentation
Contact
Team
MSigDB Home
Human Collections
About
Browse
Search
Investigate
Gene Families
Mouse Collections
About
Browse
Search
Investigate
Help
Human Gene Set: chr6q13
Standard name
chr6q13
Systematic name
M3564
Brief description
Ensembl 112 genes in cytogenetic band chr6q13
Full description or abstract
Collection
C1: Positional
Source publication
Exact source
Ensembl 112 human gene annotation on the GRCh38.p13 reference chromosomes only.
Related gene sets
External links
https://ensembl.org/Homo_sapiens/Location/Chromosome?r=6
Filtered by similarity
?
Source species
Homo sapiens
Contributed by
Anthony Castanza (MSigDB Team)
Source platform or
identifier namespace
Human_Ensembl_Gene_ID
Dataset references
Download gene set
format:
grp
|
gmt
|
xml
|
json
|
TSV metadata
Compute overlaps
?
(
show
collections to investigate for overlap with this gene set)
H: Hallmark
C1: Positional
C2: Curated
CGP: Chemical and Genetic Perturbations
CP: Canonical Pathways
CP:BIOCARTA: BioCarta Pathways
CP:KEGG_MEDICUS: KEGG Medicus Pathways
CP:PID: PID Pathways
CP:REACTOME: Reactome Pathways
CP:WIKIPATHWAYS: WikiPathways
CP:KEGG_LEGACY: KEGG Legacy Pathways
C3: Regulatory Target
MIR: microRNA Targets
MIR:MIRDB: miRDB
MIR:MIR_LEGACY: MIR_Legacy
TFT: Transcription Factor Targets
TFT:GTRD: GTRD
TFT:TFT_LEGACY: TFT_Legacy
C4: Computational
3CA: Curated Cancer Cell Atlas gene sets
CGN: Cancer Gene Neighborhoods
CM: Cancer Modules
C5: Ontology
GO: Gene Ontology
GO:BP: GO Biological Process
GO:CC: GO Cellular Component
GO:MF: GO Molecular Function
HPO: Human Phenotype Ontology
C6: Oncogenic Signature
C7: Immunologic Signature
IMMUNESIGDB: ImmuneSigDB
VAX: HIPC Vaccine Response
C8: Cell Type Signature
Compendia expression profiles
?
NG-CHM interactive heatmaps
(
Please note that clustering takes a few seconds
)
GTEx compendium
Human tissue compendium (Novartis)
Global Cancer Map (Broad Institute)
NCI-60 cell lines (National Cancer Institute)
Legacy heatmaps (PNG)
GTEx compendium
Human tissue compendium (Novartis)
Global Cancer Map (Broad Institute)
NCI-60 cell lines (National Cancer Institute)
Advanced query
Further investigate
these 66 genes
Gene families
?
Categorize
these 66 genes by gene family
Show members
(
show
86 source identifiers mapped to 66 genes)
Source
Id
NCBI (Entrez)
Gene Id
Gene
Symbol
Gene
Description
ENSG00000079841
22999
RIMS1
regulating synaptic mem...
ENSG00000080007
55510
DDX43
DEAD-box helicase 43 [S...
ENSG00000082269
57579
FAM135A
family with sequence si...
ENSG00000082293
1310
COL19A1
collagen type XIX alpha...
ENSG00000112280
1297
COL9A1
collagen type IX alpha ...
ENSG00000112305
60682
SMAP1
small ArfGAP 1 [Source:...
ENSG00000112309
135152
B3GAT2
beta-1,3-glucuronyltran...
ENSG00000119899
26503
SLC17A5
solute carrier family 1...
ENSG00000119900
79627
OGFRL1
opioid growth factor re...
ENSG00000135297
25821
MTO1
mitochondrial tRNA tran...
ENSG00000135314
80759
KHDC1
KH domain containing 1 ...
ENSG00000154079
135154
SDHAF4
succinate dehydrogenase...
ENSG00000156508
1915
EEF1A1
eukaryotic translation ...
ENSG00000156535
135228
CD109
CD109 molecule [Source:...
ENSG00000164430
115004
CGAS
cyclic GMP-AMP synthase...
ENSG00000168216
55788
LMBRD1
LMBR1 domain containing...
ENSG00000181514
ENSG00000185760
56479
KCNQ5
potassium voltage-gated...
ENSG00000199094
407032
MIR30C2
microRNA 30c-2 [Source:...
ENSG00000202069
106479588
RNU4-66P
RNA, U4 small nuclear 6...
ENSG00000203907
441161
OOEP
oocyte expressed protei...
ENSG00000203908
154288
KHDC3L
KH domain containing 3 ...
ENSG00000203909
340168
DPPA5
developmental pluripote...
ENSG00000207023
106479997
RNU6-975P
RNA, U6 small nuclear 9...
ENSG00000207180
106479747
RNU6-411P
RNA, U6 small nuclear 4...
ENSG00000207827
407029
MIR30A
microRNA 30a [Source:HG...
ENSG00000216365
100271020
RPL37P15
ribosomal protein L37 p...
ENSG00000217178
100128592
FAM136FP
family with sequence si...
ENSG00000217268
106480275
TXNP7
thioredoxin pseudogene ...
ENSG00000217483
ENSG00000217767
107075303
NDUFAB1P1
NADH:ubiquinone oxidore...
ENSG00000218014
441160
KRT19P1
keratin 19 pseudogene 1...
ENSG00000218350
157713
LYPLA1P3
LYPLA1 pseudogene 3 [So...
ENSG00000218459
100271118
RPS27P15
ribosomal protein S27 p...
ENSG00000218483
ENSG00000218732
ENSG00000218870
100128312
SLC25A6P6
solute carrier family 2...
ENSG00000219085
100422261
NPM1P37
nucleophosmin 1 pseudog...
ENSG00000219575
100131890
NGRNP2
NGRN pseudogene 2 [Sour...
ENSG00000219669
100420149
BECN1P2
beclin 1 pseudogene 2 [...
ENSG00000219736
100127900
NUP50P4
NUP50 pseudogene 4 [Sou...
ENSG00000219881
100240707
GAPDHP42
glyceraldehyde 3 phosph...
ENSG00000220515
100420633
PGAM1P10
phosphoglycerate mutase...
ENSG00000221345
124900922
U3
Small nucleolar RNA U3 ...
ENSG00000223389
106480801
SDCBP2P1
syndecan binding protei...
ENSG00000223765
102724000
LINC01626
long intergenic non-pro...
ENSG00000223786
101928516
ENSG00000223786
novel transcript
ENSG00000223967
ENSG00000224221
100128450
RPS6P8
ribosomal protein S6 ps...
ENSG00000224349
105377849
FAM135A-AS1
FAM135A antisense RNA 1...
ENSG00000224583
ENSG00000226840
780810
PAICSP3
phosphoribosylaminoimid...
ENSG00000229154
100873997
KCNQ5-AS1
KCNQ5 antisense RNA 1 [...
ENSG00000229852
122539212
KHDC1-AS1
KHDC1 antisense RNA 1 [...
ENSG00000229862
124901342
EEF1A1-AS1
EEF1A1 antisense RNA 1 ...
ENSG00000230597
ENSG00000231332
106478938
OOEP-AS1
OOEP antisense RNA 1 [S...
ENSG00000231652
101928489
CD109-AS1
CD109 antisense RNA 1 [...
ENSG00000232389
ENSG00000232422
100420843
KNOP1P4
lysine rich nucleolar p...
ENSG00000233237
79940
LINC00472
long intergenic non-pro...
ENSG00000234025
100421512
RBPMS2P1
RBPMS2 pseudogene 1 [So...
ENSG00000234882
3647
EIF3EP1
EIF3E pseudogene 1 [Sou...
ENSG00000235174
285785
RPL39P3
ribosomal protein L39 p...
ENSG00000237643
101928353
LINC01610
long intergenic non-pro...
ENSG00000238386
100147835
RNU7-48P
RNA, U7 small nuclear 4...
ENSG00000239626
100270918
RPSAP41
ribosomal protein SA ps...
ENSG00000243501
ENSG00000251360
653194
KHDC1P1
KH domain containing 1 ...
ENSG00000253809
ENSG00000256980
100129128
KHDC1L
KH domain containing 1 ...
ENSG00000262803
ENSG00000266180
100423005
MIR4282
microRNA 4282 [Source:H...
ENSG00000271967
ENSG00000271986
106481762
RN7SL827P
RNA, 7SL, cytoplasmic 8...
ENSG00000272243
105377858
ENSG00000272243
novel transcript
ENSG00000276127
ENSG00000279289
ENSG00000279790
ENSG00000285844
112267960
KCNQ5-DT
KCNQ5 divergent transcr...
ENSG00000285963
ENSG00000287300
105377848
ENSG00000287300
novel transcript
ENSG00000287380
ENSG00000287939
ENSG00000289286
ENSG00000290002
Version history
2023.1.Hs: Updated to Ensembl 109
See
MSigDB license terms here
. Please note that certain gene sets have special access terms.