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Human Gene Set: TRAVAGLINI_LUNG_CAPILLARY_CELL
Standard name
TRAVAGLINI_LUNG_CAPILLARY_CELL
Systematic name
M41665
Brief description
Full description or abstract
Collection
C8: Cell Type Signature
Source publication
Pubmed 33208946
Authors: Travaglini KJ,Nabhan AN,Penland L,Sinha R,Gillich A,Sit RV,Chang S,Conley SD,Mori Y,Seita J,Berry GJ,Shrager JB,Metzger RJ,Kuo CS,Neff N,Weissman IL,Quake SR,Krasnow MA
Exact source
Supplementary Table 4 (41586_2020_2922_MOESM6_ESM-1) Intersection of Cluster 19 and Cluster 19.SS2
Related gene sets
(
show
53 additional gene sets from the source publication)
TRAVAGLINI_LUNG_ADVENTITIAL_FIBROBLAST_CELL
TRAVAGLINI_LUNG_AIRWAY_SMOOTH_MUSCLE_CELL
TRAVAGLINI_LUNG_ALVEOLAR_EPITHELIAL_TYPE_1_CELL
TRAVAGLINI_LUNG_ALVEOLAR_EPITHELIAL_TYPE_2_CELL
TRAVAGLINI_LUNG_ALVEOLAR_FIBROBLAST_CELL
TRAVAGLINI_LUNG_ARTERY_CELL
TRAVAGLINI_LUNG_B_CELL
TRAVAGLINI_LUNG_BASAL_CELL
TRAVAGLINI_LUNG_BASOPHIL_MAST_1_CELL
TRAVAGLINI_LUNG_BASOPHIL_MAST_2_CELL
TRAVAGLINI_LUNG_BRONCHIAL_VESSEL_1_CELL
TRAVAGLINI_LUNG_BRONCHIAL_VESSEL_2_CELL
TRAVAGLINI_LUNG_CAPILLARY_AEROCYTE_CELL
TRAVAGLINI_LUNG_CAPILLARY_INTERMEDIATE_1_CELL
TRAVAGLINI_LUNG_CAPILLARY_INTERMEDIATE_2_CELL
TRAVAGLINI_LUNG_CD4_MEMORY_EFFECTOR_T_CELL
TRAVAGLINI_LUNG_CD4_NAIVE_T_CELL
TRAVAGLINI_LUNG_CD8_MEMORY_EFFECTOR_T_CELL
TRAVAGLINI_LUNG_CD8_NAIVE_T_CELL
TRAVAGLINI_LUNG_CILIATED_CELL
TRAVAGLINI_LUNG_CLASSICAL_MONOCYTE_CELL
TRAVAGLINI_LUNG_CLUB_CELL
TRAVAGLINI_LUNG_DIFFERENTIATING_BASAL_CELL
TRAVAGLINI_LUNG_EREG_DENDRITIC_CELL
TRAVAGLINI_LUNG_FIBROMYOCYTE_CELL
TRAVAGLINI_LUNG_GOBLET_CELL
TRAVAGLINI_LUNG_IGSF21_DENDRITIC_CELL
TRAVAGLINI_LUNG_LIPOFIBROBLAST_CELL
TRAVAGLINI_LUNG_LYMPHATIC_CELL
TRAVAGLINI_LUNG_MACROPHAGE_CELL
TRAVAGLINI_LUNG_MESOTHELIAL_CELL
TRAVAGLINI_LUNG_MUCOUS_CELL
TRAVAGLINI_LUNG_MYELOID_DENDRITIC_TYPE_1_CELL
TRAVAGLINI_LUNG_MYOFIBROBLAST_CELL
TRAVAGLINI_LUNG_NATURAL_KILLER_CELL
TRAVAGLINI_LUNG_NATURAL_KILLER_T_CELL
TRAVAGLINI_LUNG_NEUROENDOCRINE_CELL
TRAVAGLINI_LUNG_NEUTROPHIL_CELL
TRAVAGLINI_LUNG_NONCLASSICAL_MONOCYTE_CELL
TRAVAGLINI_LUNG_OLR1_CLASSICAL_MONOCYTE_CELL
TRAVAGLINI_LUNG_PERICYTE_CELL
TRAVAGLINI_LUNG_PLASMACYTOID_DENDRITIC_CELL
TRAVAGLINI_LUNG_PLATELET_MEGAKARYOCYTE_CELL
TRAVAGLINI_LUNG_PROLIFERATING_BASAL_CELL
TRAVAGLINI_LUNG_PROLIFERATING_MACROPHAGE_CELL
TRAVAGLINI_LUNG_PROLIFERATING_NK_T_CELL
TRAVAGLINI_LUNG_PROXIMAL_BASAL_CELL
TRAVAGLINI_LUNG_PROXIMAL_CILIATED_CELL
TRAVAGLINI_LUNG_SEROUS_CELL
TRAVAGLINI_LUNG_SIGNALING_ALVEOLAR_EPITHELIAL_TYPE_2_CELL
TRAVAGLINI_LUNG_TREM2_DENDRITIC_CELL
TRAVAGLINI_LUNG_VASCULAR_SMOOTH_MUSCLE_CELL
TRAVAGLINI_LUNG_VEIN_CELL
(
show
47 gene sets from the same authors)
AGUIRRE_PANCREATIC_CANCER_COPY_NUMBER_DN
AGUIRRE_PANCREATIC_CANCER_COPY_NUMBER_UP
GOLDRATH_EFF_VS_MEMORY_CD8_TCELL_DN
GOLDRATH_EFF_VS_MEMORY_CD8_TCELL_UP
GOLDRATH_NAIVE_VS_EFF_CD8_TCELL_DN
GOLDRATH_NAIVE_VS_EFF_CD8_TCELL_UP
GOLDRATH_NAIVE_VS_MEMORY_CD8_TCELL_DN
GOLDRATH_NAIVE_VS_MEMORY_CD8_TCELL_UP
GSE24574_BCL6_HIGH_TFH_VS_NAIVE_CD4_TCELL_DN
GSE24574_BCL6_HIGH_TFH_VS_NAIVE_CD4_TCELL_UP
GSE24574_BCL6_HIGH_TFH_VS_TCONV_CD4_TCELL_DN
GSE24574_BCL6_HIGH_TFH_VS_TCONV_CD4_TCELL_UP
GSE24574_BCL6_HIGH_TFH_VS_TFH_CD4_TCELL_DN
GSE24574_BCL6_HIGH_TFH_VS_TFH_CD4_TCELL_UP
GSE24574_BCL6_HIGH_VS_LOW_TFH_CD4_TCELL_DN
GSE24574_BCL6_HIGH_VS_LOW_TFH_CD4_TCELL_UP
GSE24574_BCL6_LOW_TFH_VS_NAIVE_CD4_TCELL_DN
GSE24574_BCL6_LOW_TFH_VS_NAIVE_CD4_TCELL_UP
GSE24574_BCL6_LOW_TFH_VS_TCONV_CD4_TCELL_DN
GSE24574_BCL6_LOW_TFH_VS_TCONV_CD4_TCELL_UP
GSE24574_NAIVE_VS_TCONV_CD4_TCELL_DN
GSE24574_NAIVE_VS_TCONV_CD4_TCELL_UP
GSE4142_GC_BCELL_VS_MEMORY_BCELL_DN
GSE4142_GC_BCELL_VS_MEMORY_BCELL_UP
GSE4142_NAIVE_BCELL_VS_PLASMA_CELL_DN
GSE4142_NAIVE_BCELL_VS_PLASMA_CELL_UP
GSE4142_NAIVE_VS_GC_BCELL_DN
GSE4142_NAIVE_VS_GC_BCELL_UP
GSE4142_NAIVE_VS_MEMORY_BCELL_DN
GSE4142_NAIVE_VS_MEMORY_BCELL_UP
GSE4142_PLASMA_CELL_VS_GC_BCELL_DN
GSE4142_PLASMA_CELL_VS_GC_BCELL_UP
GSE4142_PLASMA_CELL_VS_MEMORY_BCELL_DN
GSE4142_PLASMA_CELL_VS_MEMORY_BCELL_UP
ITO_PTTG1_TARGETS_DN
ITO_PTTG1_TARGETS_UP
PARK_HSC_AND_MULTIPOTENT_PROGENITORS
PARK_HSC_MARKERS
PARK_HSC_VS_MULTIPOTENT_PROGENITORS_DN
PARK_HSC_VS_MULTIPOTENT_PROGENITORS_UP
WANG_BARRETTS_ESOPHAGUS_AND_ESOPHAGUS_CANCER_DN
WANG_BARRETTS_ESOPHAGUS_AND_ESOPHAGUS_CANCER_UP
WANG_BARRETTS_ESOPHAGUS_DN
WANG_BARRETTS_ESOPHAGUS_UP
WANG_ESOPHAGUS_CANCER_PROGRESSION_UP
WANG_ESOPHAGUS_CANCER_VS_NORMAL_DN
WANG_ESOPHAGUS_CANCER_VS_NORMAL_UP
External links
https://hlca.ds.czbiohub.org/
Filtered by similarity
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Source species
Homo sapiens
Contributed by
Anthony Castanza (MSigDB Team)
Source platform or
identifier namespace
HUMAN_GENE_SYMBOL
Dataset references
(
show
2 datasets)
GSE122960, GSE130148
Download gene set
format:
grp
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gmt
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xml
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json
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TSV metadata
Compute overlaps
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H: Hallmark
C1: Positional
C2: Curated
CGP: Chemical and Genetic Perturbations
CP: Canonical Pathways
CP:BIOCARTA: BioCarta Pathways
CP:KEGG_MEDICUS: KEGG Medicus Pathways
CP:PID: PID Pathways
CP:REACTOME: Reactome Pathways
CP:WIKIPATHWAYS: WikiPathways
CP:KEGG_LEGACY: KEGG Legacy Pathways
C3: Regulatory Target
MIR: microRNA Targets
MIR:MIRDB: miRDB
MIR:MIR_LEGACY: MIR_Legacy
TFT: Transcription Factor Targets
TFT:GTRD: GTRD
TFT:TFT_LEGACY: TFT_Legacy
C4: Computational
3CA: Curated Cancer Cell Atlas gene sets
CGN: Cancer Gene Neighborhoods
CM: Cancer Modules
C5: Ontology
GO: Gene Ontology
GO:BP: GO Biological Process
GO:CC: GO Cellular Component
GO:MF: GO Molecular Function
HPO: Human Phenotype Ontology
C6: Oncogenic Signature
C7: Immunologic Signature
IMMUNESIGDB: ImmuneSigDB
VAX: HIPC Vaccine Response
C8: Cell Type Signature
Compendia expression profiles
?
NG-CHM interactive heatmaps
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Please note that clustering takes a few seconds
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GTEx compendium
Human tissue compendium (Novartis)
Global Cancer Map (Broad Institute)
NCI-60 cell lines (National Cancer Institute)
Legacy heatmaps (PNG)
GTEx compendium
Human tissue compendium (Novartis)
Global Cancer Map (Broad Institute)
NCI-60 cell lines (National Cancer Institute)
Advanced query
Further investigate
these 14 genes
Gene families
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Categorize
these 14 genes by gene family
Show members
(
show
14 source identifiers mapped to 14 genes)
Source
Id
NCBI (Entrez)
Gene Id
Gene
Symbol
Gene
Description
BTNL9
153579
BTNL9
butyrophilin like 9 [Source:HGNC Symbol;...
CA4
762
CA4
carbonic anhydrase 4 [Source:HGNC Symbol...
CD36
948
CD36
CD36 molecule [Source:HGNC Symbol;Acc:HG...
DUSP6
1848
DUSP6
dual specificity phosphatase 6 [Source:H...
EDN1
1906
EDN1
endothelin 1 [Source:HGNC Symbol;Acc:HGN...
FCN3
8547
FCN3
ficolin 3 [Source:HGNC Symbol;Acc:HGNC:3...
IL7R
3575
IL7R
interleukin 7 receptor [Source:HGNC Symb...
KIAA1217
56243
KIAA1217
KIAA1217 [Source:HGNC Symbol;Acc:HGNC:25...
NTRK2
4915
NTRK2
neurotrophic receptor tyrosine kinase 2 ...
RGCC
28984
RGCC
regulator of cell cycle [Source:HGNC Sym...
RNASE1
6035
RNASE1
ribonuclease A family member 1, pancreat...
RNF144B
255488
RNF144B
ring finger protein 144B [Source:HGNC Sy...
SLC6A4
6532
SLC6A4
solute carrier family 6 member 4 [Source...
TNFSF10
8743
TNFSF10
TNF superfamily member 10 [Source:HGNC S...
Version history
7.3: First Introduced.
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