Standard name |
SU_KIDNEY |
Systematic name |
M5672 |
Brief description |
Genes up-regulated specifically in human kidney tissue. |
Full description or abstract |
High-throughput gene expression profiling has become an important tool for investigating transcriptional activity in a variety of biological samples. To date, the vast majority of these experiments have focused on specific biological processes and perturbations. Here, we have generated and analyzed gene expression from a set of samples spanning a broad range of biological conditions. Specifically, we profiled gene expression from 91 human and mouse samples across a diverse array of tissues, organs, and cell lines. Because these samples predominantly come from the normal physiological state in the human and mouse, this dataset represents a preliminary, but substantial, description of the normal mammalian transcriptome. We have used this dataset to illustrate methods of mining these data, and to reveal insights into molecular and physiological gene function, mechanisms of transcriptional regulation, disease etiology, and comparative genomics. Finally, to allow the scientific community to use this resource, we have built a free and publicly accessible website (http://expression.gnf.org) that integrates data visualization and curation of current gene annotations. |
Collection |
C2: Curated CGP: Chemical and Genetic Perturbations |
Source publication |
Pubmed 11904358 Authors: Su AI,Cooke MP,Ching KA,Hakak Y,Walker JR,Wiltshire T,Orth AP,Vega RG,Sapinoso LM,Moqrich A,Patapoutian A,Hampton GM,Schultz PG,Hogenesch JB |
Exact source |
Table 1S: Max Tissue=Kidney |
Related gene sets |
(show 6 additional gene sets from the source publication)
(show 36 gene sets from the same authors)
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External links |
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Filtered by similarity ?
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Source species |
Homo sapiens |
Contributed by |
John Newman (University of Washington) |
Source platform or identifier namespace |
AFFY_HG_U95 |
Dataset references |
(show 1 datasets)
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Download gene set |
format: grp | gmt | xml | json | TSV metadata |
Compute overlaps ? |
(show collections to investigate for overlap with this gene set)
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Compendia expression profiles ? |
NG-CHM interactive heatmaps
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GTEx compendium
Human tissue compendium (Novartis)
Global Cancer Map (Broad Institute)
NCI-60 cell lines (National Cancer Institute)
Legacy heatmaps (PNG)
GTEx compendium
Human tissue compendium (Novartis)
Global Cancer Map (Broad Institute)
NCI-60 cell lines (National Cancer Institute)
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Advanced query |
Further investigate
these 15 genes
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Gene families ? |
Categorize these
15 genes by gene family
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Show members |
(show 15 source identifiers mapped to 15 genes)
Source Id |
NCBI (Entrez) Gene Id |
Gene Symbol |
Gene Description |
31806_at |
2326 |
FMO1 |
flavin containing dimethylaniline monoxy... |
32912_at |
5456 |
POU3F4 |
POU class 3 homeobox 4 [Source:HGNC Symb... |
34024_at |
1184 |
CLCN5 |
chloride voltage-gated channel 5 [Source... |
34038_at |
6540 |
SLC6A13 |
solute carrier family 6 member 13 [Sourc... |
34516_at |
6557 |
SLC12A1 |
solute carrier family 12 member 1 [Sourc... |
35220_at |
2028 |
ENPEP |
glutamyl aminopeptidase [Source:HGNC Sym... |
35416_at |
8029 |
CUBN |
cubilin [Source:HGNC Symbol;Acc:HGNC:2548] |
35867_at |
6582 |
SLC22A2 |
solute carrier family 22 member 2 [Sourc... |
36327_at |
3758 |
KCNJ1 |
potassium inwardly rectifying channel su... |
36352_at |
54626 |
HES2 |
hes family bHLH transcription factor 2 [... |
37097_at |
6568 |
SLC17A1 |
solute carrier family 17 member 1 [Sourc... |
38304_r_at |
9365 |
KL |
klotho [Source:HGNC Symbol;Acc:HGNC:6344] |
39679_at |
359 |
AQP2 |
aquaporin 2 [Source:HGNC Symbol;Acc:HGNC... |
40037_at |
7512 |
XPNPEP2 |
X-prolyl aminopeptidase 2 [Source:HGNC S... |
711_at |
6928 |
HNF1B |
HNF1 homeobox B [Source:HGNC Symbol;Acc:... |
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Version history |
3.0: Renamed from HUMAN_TISSUE_KIDNEY
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