Standard name |
SCHERER_PBMC_YF_VAX_AGE_18_40YO_ANYD_DN |
Systematic name |
M41119 |
Brief description |
Genes down-regulated in peripheral blood mononuclear cell in adults (18-40) after exposure to YF-Vax , time point anyD |
Full description or abstract |
Gene expression in human peripheral blood mononuclear cells was systematically evaluated following smallpox and yellow fever vaccination, and naturally occurring upper respiratory infection (URI). All three infections were characterized by the induction of many interferon stimulated genes, as well as enhanced expression of genes involved in proteolysis and antigen presentation. Vaccinia infection was also characterized by a distinct expression signature composed of up-regulation of monocyte response genes, with repression of genes expressed by B and T-cells. In contrast, the yellow fever host response was characterized by a suppression of ribosomal and translation factors, distinguishing this infection from vaccinia and URI. No significant URI-specific signature was observed, perhaps reflecting greater heterogeneity in the study population and etiological agents. Taken together, these data suggest that specific host gene expression signatures may be identified that distinguish one or a small number of virus agents. |
Collection |
C7: Immunologic Signature VAX: HIPC Vaccine Response |
Source publication |
Pubmed 17651872 Authors: Scherer CA,Magness CL,Steiger KV,Poitinger ND,Caputo CM,Miner DG,Winokur PL,Klinzman D,McKee J,Pilar C,Ward PA,Gillham MH,Haulman NJ,Stapleton JT,Iadonato SP |
Exact source |
Table 4 |
Related gene sets |
(show 14 additional gene sets from the source publication)
|
External links |
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2211276/table/T4/
|
Filtered by similarity ?
|
|
Source species |
Homo sapiens |
Contributed by |
HIPC SIGNATURES (NIAID/HIPC SIGNATURES) |
Source platform or identifier namespace |
HUMAN_GENE_SYMBOL |
Dataset references |
|
Download gene set |
format: grp | gmt | xml | json | TSV metadata |
Compute overlaps ? |
(show collections to investigate for overlap with this gene set)
|
Compendia expression profiles ? |
NG-CHM interactive heatmaps
(Please note that clustering takes a few seconds)
GTEx compendium
Human tissue compendium (Novartis)
Global Cancer Map (Broad Institute)
NCI-60 cell lines (National Cancer Institute)
Legacy heatmaps (PNG)
GTEx compendium
Human tissue compendium (Novartis)
Global Cancer Map (Broad Institute)
NCI-60 cell lines (National Cancer Institute)
|
Advanced query |
Further investigate
these 19 genes
|
Gene families ? |
Categorize these
19 genes by gene family
|
Show members |
(show 19 source identifiers mapped to 19 genes)
Source Id |
NCBI (Entrez) Gene Id |
Gene Symbol |
Gene Description |
APRT |
353 |
APRT |
adenine phosphoribosyltransferase [Source:... |
C14orf2 |
9556 |
ATP5MJ |
ATP synthase membrane subunit j [Source:HG... |
C19orf6 |
91304 |
TMEM259 |
transmembrane protein 259 [Source:HGNC Sym... |
C7orf27 |
221927 |
BRAT1 |
BRCA1 associated ATM activator 1 [Source:H... |
CCNI |
10983 |
CCNI |
cyclin I [Source:HGNC Symbol;Acc:HGNC:1595] |
COL6A2 |
1292 |
COL6A2 |
collagen type VI alpha 2 chain [Source:HGN... |
CORO1A |
11151 |
CORO1A |
coronin 1A [Source:HGNC Symbol;Acc:HGNC:2252] |
DPP7 |
29952 |
DPP7 |
dipeptidyl peptidase 7 [Source:HGNC Symbol... |
EGLN2 |
112398 |
EGLN2 |
egl-9 family hypoxia inducible factor 2 [S... |
EIF4B |
1975 |
EIF4B |
eukaryotic translation initiation factor 4... |
FBXW5 |
54461 |
FBXW5 |
F-box and WD repeat domain containing 5 [S... |
LIF |
3976 |
LIF |
LIF interleukin 6 family cytokine [Source:... |
NDUFV1 |
4723 |
NDUFV1 |
NADH:ubiquinone oxidoreductase core subuni... |
PRB3 |
5544 |
PRB3 |
proline rich protein BstNI subfamily 3 [So... |
RPS13 |
6207 |
RPS13 |
ribosomal protein S13 [Source:HGNC Symbol;... |
RPS2 |
6187 |
RPS2 |
ribosomal protein S2 [Source:HGNC Symbol;A... |
RPS7 |
6201 |
RPS7 |
ribosomal protein S7 [Source:HGNC Symbol;A... |
SLC25A6 |
293 |
SLC25A6 |
solute carrier family 25 member 6 [Source:... |
VAV1 |
7409 |
VAV1 |
vav guanine nucleotide exchange factor 1 [... |
|
Version history |
7.3: First Introduced.
|