Human Gene Set: PDGF_ERK_DN.V1_DN


Standard name PDGF_ERK_DN.V1_DN
Systematic name M2828
Brief description Genes down-regulated in SH-SY5Y cells (neuroblastoma) in response to PDGF [Gene ID=] stimulation after pre-treatment with the ERK inhibitors U0126 and PD98059 [PubChem=3006531] [PubChem=4713].
Full description or abstract To define ERK/PDGFR activation signature, SH-SY5Y cells were grown to confluence and starved overnight in serum-free medium in order to silence any sustained effects from growth factor signaling. Prior to induction with 50ng/ml PDGF, cells were treated with pathway inhibitors 74 mM Apigenin or 50 mM U0126, or with DMSO (carrier) for 60 minutes. Total RNA was isolated 30 minutes after PDGF addition. Experiments were performed in duplicate. The RNA was processed and hybridized with Affymetrix U133A GeneChips.
Collection C6: Oncogenic Signature
Source publication Pubmed 18312689   Authors: Antipova AA,Stockwell BR,Golub TR
Exact source PDGF stimulation after ERL inhibition vs Controls; bottom 300 genes (diff. of means)
Related gene sets (show 3 additional gene sets from the source publication)

(show 258 gene sets from the same authors)
External links
Filtered by similarity ?
Source species Homo sapiens
Contributed by Pablo Tamayo (Broad Institute)
Source platform or
identifier namespace		 HUMAN_GENE_SYMBOL
Dataset references (show 1 datasets)
Download gene set format: grp | gmt | xml | json | TSV metadata
Compute overlaps ? (show collections to investigate for overlap with this gene set)
Compendia expression profiles ? NG-CHM interactive heatmaps
(Please note that clustering takes a few seconds)
GTEx compendium
Human tissue compendium (Novartis)
Global Cancer Map (Broad Institute)
NCI-60 cell lines (National Cancer Institute)

Legacy heatmaps (PNG)
GTEx compendium
Human tissue compendium (Novartis)
Global Cancer Map (Broad Institute)
NCI-60 cell lines (National Cancer Institute)
Advanced query Further investigate these 149 genes
Gene families ? Categorize these 149 genes by gene family
Show members (show 149 source identifiers mapped to 149 genes)
Version history  

See MSigDB license terms here. Please note that certain gene sets have special access terms.