login
register
GSEA Home
Downloads
Molecular Signatures Database
Documentation
Contact
Team
MSigDB Home
Human Collections
About
Browse
Search
Investigate
Gene Families
Mouse Collections
About
Browse
Search
Investigate
Help
Human Gene Set: MODULE_39
Standard name
MODULE_39
Systematic name
M2971
Brief description
Genes in the cancer module 39.
Full description or abstract
Collection
C4: Computational
CM: Cancer Modules
Source publication
Exact source
module_39
Related gene sets
External links
http://robotics.stanford.edu/~erans/cancer/modules/module_39
Filtered by similarity
?
Source species
Homo sapiens
Contributed by
Aviv Regev (Broad Institute)
Source platform or
identifier namespace
Human_NCBI_Gene_ID
Dataset references
Download gene set
format:
grp
|
gmt
|
xml
|
json
|
TSV metadata
Compute overlaps
?
(
show
collections to investigate for overlap with this gene set)
H: Hallmark
C1: Positional
C2: Curated
CGP: Chemical and Genetic Perturbations
CP: Canonical Pathways
CP:BIOCARTA: BioCarta Pathways
CP:KEGG_MEDICUS: KEGG Medicus Pathways
CP:PID: PID Pathways
CP:REACTOME: Reactome Pathways
CP:WIKIPATHWAYS: WikiPathways
CP:KEGG_LEGACY: KEGG Legacy Pathways
C3: Regulatory Target
MIR: microRNA Targets
MIR:MIRDB: miRDB
MIR:MIR_LEGACY: MIR_Legacy
TFT: Transcription Factor Targets
TFT:GTRD: GTRD
TFT:TFT_LEGACY: TFT_Legacy
C4: Computational
3CA: Curated Cancer Cell Atlas gene sets
CGN: Cancer Gene Neighborhoods
CM: Cancer Modules
C5: Ontology
GO: Gene Ontology
GO:BP: GO Biological Process
GO:CC: GO Cellular Component
GO:MF: GO Molecular Function
HPO: Human Phenotype Ontology
C6: Oncogenic Signature
C7: Immunologic Signature
IMMUNESIGDB: ImmuneSigDB
VAX: HIPC Vaccine Response
C8: Cell Type Signature
Compendia expression profiles
?
NG-CHM interactive heatmaps
(
Please note that clustering takes a few seconds
)
GTEx compendium
Human tissue compendium (Novartis)
Global Cancer Map (Broad Institute)
NCI-60 cell lines (National Cancer Institute)
Legacy heatmaps (PNG)
GTEx compendium
Human tissue compendium (Novartis)
Global Cancer Map (Broad Institute)
NCI-60 cell lines (National Cancer Institute)
Advanced query
Further investigate
these 10 genes
Gene families
?
Categorize
these 10 genes by gene family
Show members
(
show
10 source identifiers mapped to 10 genes)
Source
Id
NCBI (Entrez)
Gene Id
Gene
Symbol
Gene
Description
1175
1175
AP2S1
adaptor related protein complex 2 subunit sigm...
1176
1176
AP3S1
adaptor related protein complex 3 subunit sigm...
160
160
AP2A1
adaptor related protein complex 2 subunit alph...
22872
22872
SEC31A
SEC31 homolog A, COPII coat complex component ...
3208
3208
HPCA
hippocalcin [Source:HGNC Symbol;Acc:HGNC:5144]
3241
3241
HPCAL1
hippocalcin like 1 [Source:HGNC Symbol;Acc:HGN...
372
372
ARCN1
archain 1 [Source:HGNC Symbol;Acc:HGNC:649]
7804
7804
LRP8
LDL receptor related protein 8 [Source:HGNC Sy...
8905
8905
AP1S2
adaptor related protein complex 1 subunit sigm...
9871
9871
SEC24D
SEC24 homolog D, COPII coat complex component ...
Version history
3.1: module_39
See
MSigDB license terms here
. Please note that certain gene sets have special access terms.