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Human Gene Set: HP_SUBSTANTIA_NIGRA_GLIOSIS
Standard name
HP_SUBSTANTIA_NIGRA_GLIOSIS
Systematic name
M37971
Brief description
Substantia nigra gliosis
Full description or abstract
Focal proliferation of glial cells in the substantia nigra. [https://orcid.org/0000-0002-0736-9199]
Collection
C5: Ontology
HPO: Human Phenotype Ontology
Source publication
Exact source
HP:0011960
Related gene sets
External links
https://hpo.jax.org/app/browse/term/HP:0011960
Filtered by similarity
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Source species
Homo sapiens
Contributed by
Human Phenotype Ontology Group (The Jackson Laboratory (JAX))
Source platform or
identifier namespace
Human_NCBI_Gene_ID
Dataset references
Download gene set
format:
grp
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gmt
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xml
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json
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TSV metadata
Compute overlaps
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H: Hallmark
C1: Positional
C2: Curated
CGP: Chemical and Genetic Perturbations
CP: Canonical Pathways
CP:BIOCARTA: BioCarta Pathways
CP:KEGG_MEDICUS: KEGG Medicus Pathways
CP:PID: PID Pathways
CP:REACTOME: Reactome Pathways
CP:WIKIPATHWAYS: WikiPathways
CP:KEGG_LEGACY: KEGG Legacy Pathways
C3: Regulatory Target
MIR: microRNA Targets
MIR:MIRDB: miRDB
MIR:MIR_LEGACY: MIR_Legacy
TFT: Transcription Factor Targets
TFT:GTRD: GTRD
TFT:TFT_LEGACY: TFT_Legacy
C4: Computational
3CA: Curated Cancer Cell Atlas gene sets
CGN: Cancer Gene Neighborhoods
CM: Cancer Modules
C5: Ontology
GO: Gene Ontology
GO:BP: GO Biological Process
GO:CC: GO Cellular Component
GO:MF: GO Molecular Function
HPO: Human Phenotype Ontology
C6: Oncogenic Signature
C7: Immunologic Signature
IMMUNESIGDB: ImmuneSigDB
VAX: HIPC Vaccine Response
C8: Cell Type Signature
Compendia expression profiles
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NG-CHM interactive heatmaps
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GTEx compendium
Human tissue compendium (Novartis)
Global Cancer Map (Broad Institute)
NCI-60 cell lines (National Cancer Institute)
Legacy heatmaps (PNG)
GTEx compendium
Human tissue compendium (Novartis)
Global Cancer Map (Broad Institute)
NCI-60 cell lines (National Cancer Institute)
Advanced query
Further investigate
these 14 genes
Gene families
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Categorize
these 14 genes by gene family
Show members
(
show
14 source identifiers mapped to 14 genes)
Source
Id
NCBI (Entrez)
Gene Id
Gene
Symbol
Gene
Description
120892
120892
LRRK2
leucine rich repeat kinase 2 [Source:HGNC S...
126
126
ADH1C
alcohol dehydrogenase 1C (class I), gamma p...
25793
25793
FBXO7
F-box protein 7 [Source:HGNC Symbol;Acc:HGN...
2629
2629
GBA1
glucosylceramidase beta 1 [Source:HGNC Symb...
4137
4137
MAPT
microtubule associated protein tau [Source:...
4287
4287
ATXN3
ataxin 3 [Source:HGNC Symbol;Acc:HGNC:7106]
4576
4576
MT-TT
mitochondrially encoded tRNA-Thr (ACN) [Sou...
4929
4929
NR4A2
nuclear receptor subfamily 4 group A member...
5071
5071
PRKN
parkin RBR E3 ubiquitin protein ligase [Sou...
6311
6311
ATXN2
ataxin 2 [Source:HGNC Symbol;Acc:HGNC:10555]
6315
6315
ATXN8OS
ATXN8 opposite strand lncRNA [Source:HGNC S...
6622
6622
SNCA
synuclein alpha [Source:HGNC Symbol;Acc:HGN...
6908
6908
TBP
TATA-box binding protein [Source:HGNC Symbo...
9627
9627
SNCAIP
synuclein alpha interacting protein [Source...
Version history
2024.1.Hs: Updated to HPO Release 2024-04-26.
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