login
register
GSEA Home
Downloads
Molecular Signatures Database
Documentation
Contact
Team
MSigDB Home
Human Collections
About
Browse
Search
Investigate
Gene Families
Mouse Collections
About
Browse
Search
Investigate
Help
Human Gene Set: HP_CERVICAL_RIBS
Standard name
HP_CERVICAL_RIBS
Systematic name
M35006
Brief description
Cervical ribs
Full description or abstract
Collection
C5: Ontology
HPO: Human Phenotype Ontology
Source publication
Exact source
HP:0000891
Related gene sets
External links
https://hpo.jax.org/app/browse/term/HP:0000891
Filtered by similarity
?
Source species
Homo sapiens
Contributed by
Human Phenotype Ontology Group (The Jackson Laboratory (JAX))
Source platform or
identifier namespace
Human_NCBI_Gene_ID
Dataset references
Download gene set
format:
grp
|
gmt
|
xml
|
json
|
TSV metadata
Compute overlaps
?
(
show
collections to investigate for overlap with this gene set)
H: Hallmark
C1: Positional
C2: Curated
CGP: Chemical and Genetic Perturbations
CP: Canonical Pathways
CP:BIOCARTA: BioCarta Pathways
CP:KEGG_MEDICUS: KEGG Medicus Pathways
CP:PID: PID Pathways
CP:REACTOME: Reactome Pathways
CP:WIKIPATHWAYS: WikiPathways
CP:KEGG_LEGACY: KEGG Legacy Pathways
C3: Regulatory Target
MIR: microRNA Targets
MIR:MIRDB: miRDB
MIR:MIR_LEGACY: MIR_Legacy
TFT: Transcription Factor Targets
TFT:GTRD: GTRD
TFT:TFT_LEGACY: TFT_Legacy
C4: Computational
3CA: Curated Cancer Cell Atlas gene sets
CGN: Cancer Gene Neighborhoods
CM: Cancer Modules
C5: Ontology
GO: Gene Ontology
GO:BP: GO Biological Process
GO:CC: GO Cellular Component
GO:MF: GO Molecular Function
HPO: Human Phenotype Ontology
C6: Oncogenic Signature
C7: Immunologic Signature
IMMUNESIGDB: ImmuneSigDB
VAX: HIPC Vaccine Response
C8: Cell Type Signature
Compendia expression profiles
?
NG-CHM interactive heatmaps
(
Please note that clustering takes a few seconds
)
GTEx compendium
Human tissue compendium (Novartis)
Global Cancer Map (Broad Institute)
NCI-60 cell lines (National Cancer Institute)
Legacy heatmaps (PNG)
GTEx compendium
Human tissue compendium (Novartis)
Global Cancer Map (Broad Institute)
NCI-60 cell lines (National Cancer Institute)
Advanced query
Further investigate
these 13 genes
Gene families
?
Categorize
these 13 genes by gene family
Show members
(
show
13 source identifiers mapped to 13 genes)
Source
Id
NCBI (Entrez)
Gene Id
Gene
Symbol
Gene
Description
10992
10992
SF3B2
splicing factor 3b subunit 2 [Source:HGNC Sym...
2239
2239
GPC4
glypican 4 [Source:HGNC Symbol;Acc:HGNC:4452]
22827
22827
PUF60
poly(U) binding splicing factor 60 [Source:HG...
2627
2627
GATA6
GATA binding protein 6 [Source:HGNC Symbol;Ac...
2719
2719
GPC3
glypican 3 [Source:HGNC Symbol;Acc:HGNC:4451]
29123
29123
ANKRD11
ankyrin repeat domain containing 11 [Source:H...
3899
3899
AFF3
ALF transcription elongation factor 3 [Source...
5159
5159
PDGFRB
platelet derived growth factor receptor beta ...
55081
55081
IFT57
intraflagellar transport 57 [Source:HGNC Symb...
60
60
ACTB
actin beta [Source:HGNC Symbol;Acc:HGNC:132]
6651
6651
SON
SON DNA and RNA binding protein [Source:HGNC ...
860
860
RUNX2
RUNX family transcription factor 2 [Source:HG...
9939
9939
RBM8A
RNA binding motif protein 8A [Source:HGNC Sym...
Version history
2024.1.Hs: Updated to HPO Release 2024-04-26.
See
MSigDB license terms here
. Please note that certain gene sets have special access terms.