Human Gene Set: HOFFMANN_PRE_BI_TO_LARGE_PRE_BII_LYMPHOCYTE_UP

For the Mouse gene set with the same name, see HOFFMANN_PRE_BI_TO_LARGE_PRE_BII_LYMPHOCYTE_UP

Standard name HOFFMANN_PRE_BI_TO_LARGE_PRE_BII_LYMPHOCYTE_UP
Systematic name M5589
Brief description Genes up-regulated during differentiation from pre-BI to large pre-BII lymphocyte.
Full description or abstract Gene expression profiles of five consecutive stages of mouse B cell development were generated with high-density oligonucleotide arrays from as few as 2 x 10(4) ex vivo isolated and flow-cytometrically purified cells. Between 2.8% and 6.8% of all genes change on differentiation from one cellular stage to the next by at least twofold. The entire pathway involves differential expression of 10.7% of all genes. Previously known expression patterns of 15 genes (like surrogate light chain, RAG-1/2, MHC class II, mel-14 antigen) are confirmed. The gene expression patterns of the proliferating pre-BI and large pre-BII cells on the one hand, and the resting immature and mature B cells on the other hand, are most similar to each other. Small pre-BII cells display a pattern that is transitional between these two groups. Most of the genes expressed in early precursors are involved in general processes, like protein folding or cell cycle regulation, whereas more mature precursors express genes involved in more specific molecular programs (cell surface receptors, secreted factors, and adhesion molecules, among others). Between 19 and 139 genes share a given expression pattern. Combining knowledge about gene function and expression pattern allows identification of novel candidate genes potentially involved in self-maintenance of pre-BI cells, allelic exclusion and pre-B cell receptor signaling in large pre BII cells, cell-cycle arrest of small pre-BII cells, propensity toward apoptosis or anergization in immature B cells, propensity toward cell division and activation in mature B cells, and stage-specific interactions with stromal cells in the bone marrow.
Collection C2: Curated
      CGP: Chemical and Genetic Perturbations
Source publication Pubmed 11779835   Authors: Hoffmann R,Seidl T,Neeb M,Rolink A,Melchers F
Exact source Table 2S: CHGF_PRE_LAR>=4
Related gene sets (show 7 additional gene sets from the source publication)

(show 29 gene sets from the same authors)
External links
Filtered by similarity ?
Source species Mus musculus
Contributed by Arthur Liberzon (MSigDB Team)
Source platform or
identifier namespace		 AFFY_Mu11K
Dataset references  
Download gene set format: grp | gmt | xml | json | TSV metadata
Compute overlaps ? (show collections to investigate for overlap with this gene set)
Compendia expression profiles ? NG-CHM interactive heatmaps
(Please note that clustering takes a few seconds)
GTEx compendium
Human tissue compendium (Novartis)
Global Cancer Map (Broad Institute)
NCI-60 cell lines (National Cancer Institute)

Legacy heatmaps (PNG)
GTEx compendium
Human tissue compendium (Novartis)
Global Cancer Map (Broad Institute)
NCI-60 cell lines (National Cancer Institute)
Advanced query Further investigate these 29 genes
Gene families ? Categorize these 29 genes by gene family
Show members (show 43 source identifiers mapped to 29 genes)
Version history  

See MSigDB license terms here. Please note that certain gene sets have special access terms.