login
register
GSEA Home
Downloads
Molecular Signatures Database
Documentation
Contact
Team
MSigDB Home
Human Collections
About
Browse
Search
Investigate
Gene Families
Mouse Collections
About
Browse
Search
Investigate
Help
Human Gene Set: GOBP_AMINO_ACID_BETAINE_BIOSYNTHETIC_PROCESS
Standard name
GOBP_AMINO_ACID_BETAINE_BIOSYNTHETIC_PROCESS
Systematic name
M22438
Brief description
The chemical reactions and pathways resulting in the formation of any betaine, the N-trimethyl derivative of an amino acid. [GOC:mah, ISBN:0198506732]
Full description or abstract
Collection
C5: Ontology
GO: Gene Ontology
GO:BP: GO Biological Process
Source publication
Exact source
GO:0006578
Related gene sets
External links
http://amigo.geneontology.org/amigo/term/GO:0006578
Filtered by similarity
?
Source species
Homo sapiens
Contributed by
Gene Ontology (Gene Ontology Consortium)
Source platform or
identifier namespace
Human_NCBI_Gene_ID
Dataset references
Download gene set
format:
grp
|
gmt
|
xml
|
json
|
TSV metadata
Compute overlaps
?
(
show
collections to investigate for overlap with this gene set)
H: Hallmark
C1: Positional
C2: Curated
CGP: Chemical and Genetic Perturbations
CP: Canonical Pathways
CP:BIOCARTA: BioCarta Pathways
CP:KEGG_MEDICUS: KEGG Medicus Pathways
CP:PID: PID Pathways
CP:REACTOME: Reactome Pathways
CP:WIKIPATHWAYS: WikiPathways
CP:KEGG_LEGACY: KEGG Legacy Pathways
C3: Regulatory Target
MIR: microRNA Targets
MIR:MIRDB: miRDB
MIR:MIR_LEGACY: MIR_Legacy
TFT: Transcription Factor Targets
TFT:GTRD: GTRD
TFT:TFT_LEGACY: TFT_Legacy
C4: Computational
3CA: Curated Cancer Cell Atlas gene sets
CGN: Cancer Gene Neighborhoods
CM: Cancer Modules
C5: Ontology
GO: Gene Ontology
GO:BP: GO Biological Process
GO:CC: GO Cellular Component
GO:MF: GO Molecular Function
HPO: Human Phenotype Ontology
C6: Oncogenic Signature
C7: Immunologic Signature
IMMUNESIGDB: ImmuneSigDB
VAX: HIPC Vaccine Response
C8: Cell Type Signature
Compendia expression profiles
?
NG-CHM interactive heatmaps
(
Please note that clustering takes a few seconds
)
GTEx compendium
Human tissue compendium (Novartis)
Global Cancer Map (Broad Institute)
NCI-60 cell lines (National Cancer Institute)
Legacy heatmaps (PNG)
GTEx compendium
Human tissue compendium (Novartis)
Global Cancer Map (Broad Institute)
NCI-60 cell lines (National Cancer Institute)
Advanced query
Further investigate
these 6 genes
Gene families
?
Categorize
these 6 genes by gene family
Show members
(
show
6 source identifiers mapped to 6 genes)
Source
Id
NCBI (Entrez)
Gene Id
Gene
Symbol
Gene
Description
223
223
ALDH9A1
aldehyde dehydrogenase 9 family member A1 [So...
34
34
ACADM
acyl-CoA dehydrogenase medium chain [Source:H...
501
501
ALDH7A1
aldehyde dehydrogenase 7 family member A1 [So...
55217
55217
TMLHE
trimethyllysine hydroxylase, epsilon [Source:...
55349
55349
CHDH
choline dehydrogenase [Source:HGNC Symbol;Acc...
8424
8424
BBOX1
gamma-butyrobetaine hydroxylase 1 [Source:HGN...
Version history
2024.1.Hs: Updated to GO Release 2024-04-24.
See
MSigDB license terms here
. Please note that certain gene sets have special access terms.