Human Gene Set: AIZARANI_LIVER_C24_EPCAM_POS_BILE_DUCT_CELLS_3


Standard name AIZARANI_LIVER_C24_EPCAM_POS_BILE_DUCT_CELLS_3
Systematic name M39125
Brief description  
Full description or abstract  
Collection C8: Cell Type Signature
Source publication Pubmed 31292543   Authors: Aizarani N,Saviano A,Sagar,Mailly L,Durand S,Herman JS,Pessaux P,Baumert TF,Grün D
Exact source Supplementary Table 1 Gene expression signatures of all clusters. Official gene symbol, mean expression across all genes not contained within a cluster (mean.ncl), mean expression across all genes contained within a cluster (mean.cl), fold change between cluster and non-cluster cells (fc), differential expression p-value (pv, see Methods), and Benjamini-Hochberg corrected p-value are given. Only genes with P<0.01 are shown for each cluster. (n= 10,372 cells). These cluster markers were further filtered to include only genes with a FC>2.
Related gene sets (show 30 additional gene sets from the source publication)

(show 9 gene sets from the same authors)
External links http://human-liver-cell-atlas.ie-freiburg.mpg.de/
Filtered by similarity ?
Source species Homo sapiens
Contributed by Anthony Castanza (MSigDB Team)
Source platform or
identifier namespace		 HUMAN_GENE_SYMBOL
Dataset references (show 1 datasets)
Download gene set format: grp | gmt | xml | json | TSV metadata
Compute overlaps ? (show collections to investigate for overlap with this gene set)
Compendia expression profiles ? NG-CHM interactive heatmaps
(Please note that clustering takes a few seconds)
GTEx compendium
Human tissue compendium (Novartis)
Global Cancer Map (Broad Institute)
NCI-60 cell lines (National Cancer Institute)

Legacy heatmaps (PNG)
GTEx compendium
Human tissue compendium (Novartis)
Global Cancer Map (Broad Institute)
NCI-60 cell lines (National Cancer Institute)
Advanced query Further investigate these 185 genes
Gene families ? Categorize these 185 genes by gene family
Show members (show 185 source identifiers mapped to 185 genes)
Version history  

See MSigDB license terms here. Please note that certain gene sets have special access terms.