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Human Gene Set: BIOCARTA_RHODOPSIN_PATHWAY
Standard name
BIOCARTA_RHODOPSIN_PATHWAY
Systematic name
M22044
Brief description
Visual Signal Transduction
Full description or abstract
Collection
C2: Curated
CP: Canonical Pathways
CP:BIOCARTA: BioCarta Pathways
Source publication
Exact source
Related gene sets
External links
https://data.broadinstitute.org/gsea-msigdb/msigdb/biocarta/human/h_rhodopsinPathway.gif
Filtered by similarity
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Source species
Homo sapiens
Contributed by
BioCarta
Source platform or
identifier namespace
HUMAN_SEQ_ACCESSION
Dataset references
Download gene set
format:
grp
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gmt
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xml
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json
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TSV metadata
Compute overlaps
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H: Hallmark
C1: Positional
C2: Curated
CGP: Chemical and Genetic Perturbations
CP: Canonical Pathways
CP:BIOCARTA: BioCarta Pathways
CP:KEGG_MEDICUS: KEGG Medicus Pathways
CP:PID: PID Pathways
CP:REACTOME: Reactome Pathways
CP:WIKIPATHWAYS: WikiPathways
CP:KEGG_LEGACY: KEGG Legacy Pathways
C3: Regulatory Target
MIR: microRNA Targets
MIR:MIRDB: miRDB
MIR:MIR_LEGACY: MIR_Legacy
TFT: Transcription Factor Targets
TFT:GTRD: GTRD
TFT:TFT_LEGACY: TFT_Legacy
C4: Computational
3CA: Curated Cancer Cell Atlas gene sets
CGN: Cancer Gene Neighborhoods
CM: Cancer Modules
C5: Ontology
GO: Gene Ontology
GO:BP: GO Biological Process
GO:CC: GO Cellular Component
GO:MF: GO Molecular Function
HPO: Human Phenotype Ontology
C6: Oncogenic Signature
C7: Immunologic Signature
IMMUNESIGDB: ImmuneSigDB
VAX: HIPC Vaccine Response
C8: Cell Type Signature
Compendia expression profiles
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NG-CHM interactive heatmaps
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GTEx compendium
Human tissue compendium (Novartis)
Global Cancer Map (Broad Institute)
NCI-60 cell lines (National Cancer Institute)
Legacy heatmaps (PNG)
GTEx compendium
Human tissue compendium (Novartis)
Global Cancer Map (Broad Institute)
NCI-60 cell lines (National Cancer Institute)
Advanced query
Further investigate
these 11 genes
Gene families
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Categorize
these 11 genes by gene family
Show members
(
show
17 source identifiers mapped to 11 genes)
Source
Id
NCBI (Entrez)
Gene Id
Gene
Symbol
Gene
Description
BC016954
101929372
ENSG00000236754
novel transcript
BC039412
5158
PDE6B
phosphodiesterase 6B [Sour...
BX647503
6011
GRK1
G protein-coupled receptor...
NM_000283
5158
PDE6B
phosphodiesterase 6B [Sour...
NM_000409
118142757
GUCA1ANB-GUCA1A
GUCA1ANB-GUCA1A readthroug...
NM_000440
5145
PDE6A
phosphodiesterase 6A [Sour...
NM_000539
6010
RHO
rhodopsin [Source:HGNC Sym...
NM_000541
6295
SAG
S-antigen visual arrestin ...
NM_001145291
5158
PDE6B
phosphodiesterase 6B [Sour...
NM_001145292
5158
PDE6B
phosphodiesterase 6B [Sour...
NM_001191060
79751
SLC25A22
solute carrier family 25 m...
NM_001191061
79751
SLC25A22
solute carrier family 25 m...
NM_002602
5148
PDE6G
phosphodiesterase 6G [Sour...
NM_002903
5957
RCVRN
recoverin [Source:HGNC Sym...
NM_002929
6011
GRK1
G protein-coupled receptor...
NM_024698
79751
SLC25A22
solute carrier family 25 m...
NM_031481
83733
SLC25A18
solute carrier family 25 m...
Version history
7.0: First introduced. Upgraded to final version of Biocarta.
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