Standard name |
RECHTIEN_PBMC_RVSV_ZEBOV_AGE_18_55YO_1DY_UP |
Systematic name |
M40942 |
Brief description |
Genes up-regulated in peripheral blood mononuclear cell 1d vs 0d in adults (18-55) after exposure to rVSV-ZEBOV , time point 1D |
Full description or abstract |
Predicting vaccine efficacy remains a challenge. We used a systems vaccinology approach to identify early innate immune correlates of antibody induction in humans receiving the Ebola vaccine rVSV-ZEBOV. Blood samples from days 0, 1, 3, 7, and 14 were analyzed for changes in cytokine levels, innate immune cell subsets, and gene expression. Integrative statistical analyses with cross-validation identified a signature of 5 early innate markers correlating with antibody titers on day 28 and beyond. Among those, IP-10 on day 3 and MFI of CXCR6 on NK cells on day 1 were independent correlates. Consistently, we found an early gene expression signature linked to IP-10. This comprehensive characterization of early innate immune responses to the rVSV-ZEBOV vaccine in humans revealed immune signatures linked to IP-10. These results suggest correlates of vaccine-induced antibody induction and provide a rationale to explore strategies for augmenting the effectiveness of vaccines through manipulation of IP-10. |
Collection |
C7: Immunologic Signature VAX: HIPC Vaccine Response |
Source publication |
Pubmed 28854372 Authors: Rechtien A,Richert L,Lorenzo H,Martrus G,Hejblum B,Dahlke C,Kasonta R,Zinser M,Stubbe H,Matschl U,Lohse A,Krähling V,Eickmann M,Becker S,VEBCON Consortium,Thiébaut R,Altfeld M,Addo MM |
Exact source |
Table 2, NFKB1 and NFKB2 mentioned in text |
Related gene sets |
(show 20 gene sets from the same authors)
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External links |
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5583508/table/tbl2/
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Filtered by similarity ?
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Source species |
Homo sapiens |
Contributed by |
HIPC SIGNATURES (NIAID/HIPC SIGNATURES) |
Source platform or identifier namespace |
HUMAN_GENE_SYMBOL |
Dataset references |
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GTEx compendium
Human tissue compendium (Novartis)
Global Cancer Map (Broad Institute)
NCI-60 cell lines (National Cancer Institute)
Legacy heatmaps (PNG)
GTEx compendium
Human tissue compendium (Novartis)
Global Cancer Map (Broad Institute)
NCI-60 cell lines (National Cancer Institute)
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Advanced query |
Further investigate
these 10 genes
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Gene families ? |
Categorize these
10 genes by gene family
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Show members |
(show 10 source identifiers mapped to 10 genes)
Source Id |
NCBI (Entrez) Gene Id |
Gene Symbol |
Gene Description |
CCL2 |
6347 |
CCL2 |
C-C motif chemokine ligand 2 [Source:HGNC Sym... |
CXCL10 |
3627 |
CXCL10 |
C-X-C motif chemokine ligand 10 [Source:HGNC ... |
HERC5 |
51191 |
HERC5 |
HECT and RLD domain containing E3 ubiquitin p... |
IFIT1 |
3434 |
IFIT1 |
interferon induced protein with tetratricopep... |
ISG15 |
9636 |
ISG15 |
ISG15 ubiquitin like modifier [Source:HGNC Sy... |
LAMP3 |
27074 |
LAMP3 |
lysosomal associated membrane protein 3 [Sour... |
NFKB1 |
4790 |
NFKB1 |
nuclear factor kappa B subunit 1 [Source:HGNC... |
NFKB2 |
4791 |
NFKB2 |
nuclear factor kappa B subunit 2 [Source:HGNC... |
RSAD2 |
91543 |
RSAD2 |
radical S-adenosyl methionine domain containi... |
USP18 |
11274 |
USP18 |
ubiquitin specific peptidase 18 [Source:HGNC ... |
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Version history |
7.3: First Introduced.
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